Commit a5b11e81 authored by Gonzalo Bayo's avatar Gonzalo Bayo

Added dataset

parent f1f9eed0
Pipeline #4074 failed with stage
in 17 minutes and 48 seconds
......@@ -5,3 +5,4 @@
[submodule "src/clint"]
path = src/clint
url = git@gitlab.gmrv.es:retrieval/Clint.git
branch = fixedConnection
......@@ -14,9 +14,9 @@ git_subproject( spineret git@gitlab.gmrv.es:retrieval/spineret.git nanTesting )
#git_subproject( apicolat git@gitlab.gmrv.es:nsviz/apicolat.git ssl_cesvima )
git_subproject( weco git@gitlab.gmrv.es:cbbsp1/weco.git fixingScripts )
#git_subproject( clint git@gitlab.gmrv.es:retrieval/Clint.git master )
#git_subproject( clint git@gitlab.gmrv.es:retrieval/Clint.git fixedConnection )
git_subproject( clintExplorer git@gitlab.gmrv.es:retrieval/ClintExplorer.git multiInstance )
#git_subproject( vishnu git@gitlab.gmrv.es:cbbsp1/vishnu.git develop )
#git_subproject( vishnu git@gitlab.gmrv.es:cbbsp1/vishnu.git develop ) #not used yet
......@@ -5,5 +5,5 @@
```bash
git clone -b csb1_install git@gitlab.gmrv.es:common/gmrvvissp.git
cd gmrvvissp
./run.sh
./createDeb.sh
```
#!/bin/bash
if [ ! -f "./gmrvvissp/apicolat.tar" ]; then
echo "Downloading apicolat.tar from etna.escet.urjc.es..."
scp -r $USER@etna.escet.urjc.es:~/repositorio/software/LibreriasWindows/apicolat.tar ./gmrvvissp
if [ ! -f "./gmrvvissp/integrated.tar" ]; then
echo "Downloading integrated.tar from etna.escet.urjc.es..."
scp -r $USER@etna.escet.urjc.es:~/repositorio/software/LibreriasWindows/integrated.tar ./gmrvvissp
fi
if [ ! -d "./gmrvvissp/geometricData" ]; then
echo "Downloading dataset geometric data from etna.escet.urjc.es..."
scp -r $USER@etna.escet.urjc.es:~/repositorio/software/LibreriasWindows/geometricData.zip ./gmrvvissp
sudo apt-get install unzip
unzip ./gmrvvissp/geometricData.zip -d ./gmrvvissp
rm geometricData.zip
fi
if [ -d "./build" ]; then
echo "Removing previous build folder..."
rm -rf build
......
......@@ -10,6 +10,10 @@ set( PROJECT_VERSION_ABI ${${PROJECT_NAME}_VERSION_ABI} )
install(DIRECTORY "${CMAKE_SOURCE_DIR}/gmrvvissp/" DESTINATION "/usr/bin" PATTERN "*.sh")
install(DIRECTORY "${CMAKE_SOURCE_DIR}/gmrvvissp/" DESTINATION "/usr/share/applications" PATTERN "*.desktop")
install(DIRECTORY "${CMAKE_SOURCE_DIR}/gmrvvissp/" DESTINATION "/opt/gmrvvissp" PATTERN "*.tar")
install(DIRECTORY "${CMAKE_SOURCE_DIR}/gmrvvissp/" DESTINATION "/opt/gmrvvissp" PATTERN "*.csv")
install(DIRECTORY "${CMAKE_SOURCE_DIR}/gmrvvissp/" DESTINATION "/opt/gmrvvissp" PATTERN "*.xml")
install(DIRECTORY "${CMAKE_SOURCE_DIR}/gmrvvissp/geometricData" DESTINATION "/opt/gmrvvissp/geometricData" PATTERN "*.obj")
install(DIRECTORY "${CMAKE_SOURCE_DIR}/gmrvvissp/geometricData" DESTINATION "/opt/gmrvvissp/geometricData" PATTERN "*.json")
include_directories( ${CMAKE_CURRENT_BINARY_DIR} )
include_directories( ${PROJECT_BINARY_DIR}/include ${PROJECT_BINARY_DIR}/src )
......
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<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE configuration SYSTEM
"http://gmrv.es/pyramidalexplorer/PyramidalExplorerData-0.2.0.dtd">
<configuration app="PyramidalExplorer" version="0.2.0"
label="segmentations">
<data objectsLabel="DFLName" additionalMeshesLabel="">
<features idColumn="DFLName" positionXColumn="MPHCentroidX"
positionYColumn="MPHCentroidY"
positionZColumn="MPHCentroidZ">
<feature sourceColumn="EGDLeftDistanceToEdge" applicationLabel="EGDLeftDistanceToEdge"
unitsLabel="um" dataType="quantitative" dataStructureType="none"/>
<feature sourceColumn="EGDRightDistanceToEdge" applicationLabel="EGDRightDistanceToEdge"
unitsLabel="um" dataType="quantitative" dataStructureType="none"/>
<feature sourceColumn="EGDTopDistanceToEdge" applicationLabel="EGDTopDistanceToEdge"
unitsLabel="um3" dataType="quantitative" dataStructureType="none"/>
<feature sourceColumn="EGDBottomDistanceToEdge" applicationLabel="EGDBottomDistanceToEdge"
unitsLabel="mV" dataType="quantitative" dataStructureType="none"/>
<feature sourceColumn="EGDFrontDistanceToEdge" applicationLabel="EGDFrontDistanceToEdge"
unitsLabel="mV" dataType="quantitative" dataStructureType="none"/>
<feature sourceColumn="EGDBackDistanceToEdge" applicationLabel="EGDBackDistanceToEdge"
unitsLabel="mV" dataType="quantitative" dataStructureType="none"/>
<feature sourceColumn="EGDTouchEdge" applicationLabel="EGDTouchEdge"
unitsLabel="mV" dataType="quantitative" dataStructureType="none"/>
<feature sourceColumn="MPHSize" applicationLabel="MPHSize"
unitsLabel="mV" dataType="quantitative" dataStructureType="none"/>
<feature sourceColumn="MPHPhysicalSize" applicationLabel="MPHPhysicalSize"
unitsLabel="mV" dataType="quantitative" dataStructureType="none"/>
<feature sourceColumn="MPHSurfaceArea" applicationLabel="MPHSurfaceArea"
unitsLabel="mV" dataType="quantitative" dataStructureType="none"/>
</features>
<set>
<objectsFeaturesCSV>/opt/gmrvvissp/dataset_sinapsis1800_con_centroides.csv</objectsFeaturesCSV>
<objectsMeshesPath>/opt/gmrvvissp/geometricData/</objectsMeshesPath>
</set>
</data>
<colors>
<additionalMeshesColor r="60" g="60" b="60" />
<backgroundColor r="0" g="0" b="0" />
</colors>
<camera>
<eye x="577.183" y="1106.67" z="290.011" />
<center x="479.859" y="-26.1715" z="670.239" />
<up x="0.0183558" y="-0.319558" z="-0.947389" />
</camera>
</configuration>
#!/bin/bash
containername="apicolat"
containername="integrated"
if [ -z $(docker volume ls -q --filter "name=mongo_volume") ]; then
echo "Creating mongo_volume..."
......@@ -13,21 +13,21 @@ if [ -z $(docker volume ls -q --filter "name=data_volume") ]; then
datadir=$(pwd)/data
fi
if [ -z $(docker images -q apicolat:latest) ]; then
echo "Loading apicolat image..."
docker load < /opt/gmrvvissp/apicolat.tar
if [ -z $(docker images -q integrated:latest) ]; then
echo "Loading integrated image..."
docker load < /opt/gmrvvissp/integrated.tar
fi
if [ -z $(docker ps -q --filter "name=apicolat") ]; then
if [ -z $(docker ps -q --filter "name=integrated") ]; then
echo "Running Docker container"
docker run --rm --name="$containername" -e NODE_PATH="/app/apicolat/web/dcexplorer/node_modules" -v $datadir:/app/data -v $mongodir:/var/lib/mongodb -p 8888:8888 -p 19000:19000 -p 19001:19001 -i $containername:latest
docker run --rm --name="$containername" -v $datadir:/app/data -v $mongodir:/var/lib/mongodb -p 8888:8888 -p 8889:8889 -p 19000:19000 -p 19001:19001 -i $containername:latest
fi
echo "Opening DCExplorer"
/usr/bin/weco -z hbp:// -u http://localhost:8888 -sp 12345 &
/usr/bin/weco -z hbp:// -u http://localhost:8888 -sp 12345 -f "/opt/gmrvvissp/dataset_sinapsis1800_con_centroides.csv" &
echo "Opening Pyramidal"
/usr/bin/build/bin/CellExplorer -z hbp:// &
/usr/bin/build/bin/CellExplorer -z hbp:// -f "/opt/gmrvvissp/dataset_sinapsis1800_con_centroides.xml" &
echo "Opening Clint"
/usr/bin/ClintExplorer -z hbp:// -sp 31400 -cu http://localhost -cp 3652 &
/usr/bin/ClintExplorer -z hbp:// -sp 31400 -ch http://localhost -cp 8889 -f "/opt/gmrvvissp/dataset_sinapsis1800_con_centroides.csv" &
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